Thanks for the reply. My main concern is potential leaking of rainwater into the fiberglass roof, where the pipe comes through. I'll add a drawing to show what I mean.
If I were to use a pipe flashing boot, how would I get a good seal between it and the roof?
The red pipe in the drawing currently doesn't exist and there is no indoor plumbing within the main building.
Yep I would use a flat roof boot, I would cut away the fibre glass back to the roof deck fit the boot clamp it up and then glass over it again glassing up the boot and then slip a pipe collar down over the top and glue in place
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