Hey guys, thanks for any comments you have posted, spent a further three hours at the job today and glad to say it is now up and running. I called Glow worm technical this morning before going back to the job as it is a long distance between the job and the suppliers. Following some helpful advice I returned to the customers house with a control interface card, feeling hopeful, plugged in the new control interface card, followed instructions and set it up to suit the boiler, finally lights and display on the boiler, however now an F9 fault code pointing towards system pressure sensor, took harness off sensor and checked for continuity (all fine) 1 hr 30mins round trip to supplier, installed new system pressure sensor and bingo everything working fine.
As per Agiles comment I wanted to satisfy myself that main board was faulty and not changed in error, disconnected new main PCB that I fitted yesterday, reconnected old one, switched on and the boiler was completely dead, refitted new board and all worked fine.
On hindsight a fixed cost repair from manufacturer probably would have worked out a lot cheaper for the customer, I only charged for parts on this job and have put it down to a learning curve.
I have applied to join the combustion chamber forum and look forward to getting some professional advice in the future.