I can only think it has been either overloaded, has got wet inside, (should be moisture sealed given the application), or there was a issue with the new motor from the start which has shortened its lifespan. In normal operation, on a properly maintained system, I'd expect the motor to last many years. Check how free the shaft is to rotate, but bear in mind if the discs haven't been rotating, the wet section will be a lot heavier than the top half that has been sitting out the water, so will be extremely unbalanced at present. Given the weight of the discs, and if the shaft/bearings are stiff, then this would put a lot of additional load on the drive system.
What do the Biozone/discs look like? If the discs are heavily coated with gunk their weight will increase massively, which could put additional strain on the motor, but in normal operation the Biozone should just contain water with small particles in suspension, if it looks like there is a lot of waste material in there you may have another issue which would require investigation. The solid waste should be retained in the primary section and break down into sludge.
Do not underestimate the weight of the plastic discs when wet, I attended a job where the maintenance crew wanted to remove the disc assembly for a large version of the Biodisc, it was calculated the weight would be around the 8 tonne mark, and a crane was duly sourced to perform the lift. In the event the crane struggled to pick it up, the driver said he was close to the working capacity of his machine and he estimated he'd got closer to 11 tonnes on his hook!