A clogged filter won't stop the oil flow.
But it will reduce it, and it will let particles pass that should have been filters out
Yes. I know for a fact that it doesn't stop the flow. In an uncertain world that fact is something I can hang on to, for I have seen it with my own eyes.
However, there is this - and it confirms what you just posted - the old pump had seized and was swapped out as part of the repair process. So I dare say that the clogged filter had been causing it to work too hard and that had led to its demise, taking the motor with it.
Had the filter been changed on an annual basis I dare say the original pump and motor would still be in the burner and none of this would have happened.